Hmm. I would have been prepared to bet (exceedingly small amounts of) money that it was plugs, but when my car was doing that, it was wires, not plugs, and that's not applicable here. I suppose plugs could still cause the issue, especially if one were mis-gapped, but even when mine were changed, they had 1/4" gouges in the emitter, and they still worked (mostly) fine.
I don't really know if it's a good idea, but I remember the only way I could get my car to throw a misfire code when the wires went bad was to go WOT at low RPM and very low speed, in 5th gear (really high load on the engine). You could try that, I guess, to see if you could get it to kick and toss a code.